Mots-Clés

Workflow RO-Crate FAIR Open Science Data Management Data Science ELN

Description

Lab Integrated Data (LabID, https://gbcs.embl.de/labid), is a web-based integrated platform for research data management featuring sample and dataset management, an inventory management system and an electronic lab notebook. It is designed to help individual scientists, research groups and core facilities better manage, annotate and share their experiments, assays, samples and datasets actively according to FAIR principles. While in LabID processed data can already be stored and connected to its primary data, associated assays (e.g. sequencing, light or electron microscopy) and original samples, accurate modelling of both Workflow (WF) and Workflow Run (an object modelling the execution a WF and gathering input & outputs datasets as well as the execution metadata e.g. parameters, configurations…) is currently lacking. In this project, we proposed to extend the LabID data model to include these concepts, offering a unified application to manage derived data provenance independently of analysis procedure and platform, and providing a concrete solution to ensure the traceability of derived data. To this end, we will use and integrate with several EOSC-Life resources e.g. WorkflowHub, RO-Crate, Galaxy, Zenodo and Workflow Run RO-Crate profiles to streamline derived data import and export.

This postdoctoral position is funded by OSCARS, a Horizon Europe project that fosters the uptake of Open Science in Europe by consolidating the achievements of world-class European RIs in the ESFRI roadmap and beyond into lasting interdisciplinary FAIR data services and working practices across scientific disciplines and communities (https://oscars-project.eu/about-oscars). The successful candidate will be the key actor of the LabID-PROV project (https://www.oscars-project.eu/projects/labid-prov-tracking-and-sharing-data-provenance-ro-crate-lab-integrated-data).

More details at https://www.embl.org/jobs/position/HD02740